Crate fasten_metrics

Gives read metrics on a read set. Values are given in a column delimited stdout.

Examples

cat testdata/four_reads.fastq | fasten_metrics | column -t

Usage

Usage: fasten_metrics [-h] [-n INT] [-p] [-v] [--each-read]
Options:
   -h, --help          Print this help menu.
   -n, --numcpus INT   Number of CPUs (default: 1)
   -p, --paired-end    The input reads are interleaved paired-end
   -v, --verbose       Print more status messages
       --each-read     Print the metrics for each read. This creates very
                       large output

Functions

• avg_qual 🔒
  Calculates average quality value from a vector of quality bytes
• main 🔒