Crate fasten_quality_filter

Transforms any low-quality base to ‘N’

Examples

cat file.fastq | fasten_quality_filter > file_with_Ns.fastq

Usage

 
Usage: fasten_quality_filter [-h] [-n INT] [-p] [-v] [-m INT]
 
Options:
    -h, --help          Print this help menu.
    -n, --numcpus INT   Number of CPUs (default: 1)
    -p, --paired-end    The input reads are interleaved paired-end
    -v, --verbose       Print more status messages
    -m, --max-quality INT
                        The maximum quality at which a base will be
                        transformed to 'N'

Functions

• main 🔒