Hash MLST analysis
With EToKi and perhaps future MLST callers, we are possibly looking at a new class of MLST databases 1. I’m not sure which caller was actuall...
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List of bioinformatics conferences
Every fiscal year, we have to predict where we are going to travel over the whole next year. However, conferences mainly post on their own website, making no...
Converting a set of VCFs to distances
I think that converting a bunch of VCF files to an alignment is still an artisinal thing. I made this sort of task in the Lyve-SET pipeline back in 2013 and ...
Open source alternatives
BioNumerics is sunsetting in December 2024. This is an issue especially in the PulseNet community where the network relies on this software to do many things...
MLST with colorid
I am pleasantly surprised by how well ColorID works with MLST. For some background, please see my previous post on cgMLST.