Tree To Reads
It looks like Tree To Reads is online in a preliminary draft! I encourage everyone to try it out! http://biorxiv.org/content/early/2016/01/22/037655 Using...
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Perl writing style
I’m taking a moment to reflect on a post that Torsten Seemann wrote a couple of years ago called “Minimum standards for bioinformatics command line tools.” ...
Krona snippet
I couldn’t find any kind of conversion Kraken and Krona recently and so I wrote up a little pipeline. Full script is available at lskScripts: https://github...
Edirect snippets
I have been really excited by the new-ish edirect utilities. I thought I’d put out my snippets and encourage anyone to show theirs too. I haven’t found a l...
The confusing vocabulary of public health and bioinformatics
In the very beginning of our Listeria project, we basically had an idea that we could use evolution to help in epidemiological investigations. The idea was ...