Module bam::bam_reader [−][src]
Expand description
Indexed and consecutive BAM readers.
Structs
BAM file reader. In contrast to IndexedReader the BamReader
allows to read all records consecutively, but does not allow random access.
BAM file reader. In contrast to BamReader the IndexedReader
allows to fetch records from arbitrary positions,
but does not allow to read all records consecutively.
IndexedReader builder. Allows to specify paths to BAM and BAI files, as well as the number of threads and an option to ignore or warn BAI modification time check.
Genomic coordinates, used in [struct.IndexedReader.html#method.fetch] and [struct.IndexedReader.html#method.pileup].
ref_id is 0-based, start-end is 0-based half-open interval.
Iterator over records in a specific region. Implements RecordReader trait.
Enums
Defines how to react to a BAI index being younger than BAM file.