Struct bam::bam_reader::Region

pub struct Region { /* fields omitted */ }

Genomic coordinates, used in [struct.IndexedReader.html#method.fetch] and [struct.IndexedReader.html#method.pileup]. ref_id is 0-based, start-end is 0-based half-open interval.

Implementations

impl Region

pub fn new(ref_id: u32, start: u32, end: u32) -> Region

Creates new region. ref_id is 0-based, start-end is 0-based half-open interval.

pub fn ref_id(&self) -> u32

pub fn start(&self) -> u32

pub fn end(&self) -> u32

pub fn len(&self) -> u32

pub fn set_ref_id(&mut self, ref_id: u32)

pub fn set_start(&mut self, start: u32)

pub fn set_end(&mut self, end: u32)

pub fn contains(&self, ref_id: u32, pos: u32) -> bool

Trait Implementations

impl Clone for Region

fn clone(&self) -> Region

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Region

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.