Struct bam::bgzip::read::ConsecutiveReader[−][src]

pub struct ConsecutiveReader<R: Read> { /* fields omitted */ }
Expand description

Reads bgzip file in a consecutive mode. Therefore, the stream does not have to implement io::Seek.

You can open the reader using from_path or from_stream. Additional threads are used to decompress blocks, while the main thread reads the blocks from a file/stream. If additional_threads is 0, the main thread will decompress blocks itself.

You can read the contents using io::Read, or read blocks using ReadBgzip trait.

Implementations

Opens a reader from a file.

Opens a reader from a stream.

Consumes the reader and returns inner stream.

Trait Implementations

Pull some bytes from this source into the specified buffer, returning how many bytes were read. Read more

Like read, except that it reads into a slice of buffers. Read more

🔬 This is a nightly-only experimental API. (can_vector)

Determines if this Reader has an efficient read_vectored implementation. Read more

Read all bytes until EOF in this source, placing them into buf. Read more

Read all bytes until EOF in this source, appending them to buf. Read more

Read the exact number of bytes required to fill buf. Read more

🔬 This is a nightly-only experimental API. (read_buf)

Pull some bytes from this source into the specified buffer. Read more

🔬 This is a nightly-only experimental API. (read_buf)

Read the exact number of bytes required to fill buf. Read more

Creates a “by reference” adaptor for this instance of Read. Read more

Transforms this Read instance to an Iterator over its bytes. Read more

Creates an adapter which will chain this stream with another. Read more

Creates an adapter which will read at most limit bytes from it. Read more

Reads and returns Block. If no blocks present, the function returns BlockError::EndOfStream. Read more

Returns the current block, if possible. This function does not advance the stream.

Pauses multi-thread reader and does nothing for single-thread reader. Read more

Auto Trait Implementations

Blanket Implementations

Gets the TypeId of self. Read more

Immutably borrows from an owned value. Read more

Mutably borrows from an owned value. Read more

Performs the conversion.

Performs the conversion.

Reads an unsigned 8 bit integer from the underlying reader. Read more

Reads a signed 8 bit integer from the underlying reader. Read more

Reads an unsigned 16 bit integer from the underlying reader. Read more

Reads a signed 16 bit integer from the underlying reader. Read more

Reads an unsigned 24 bit integer from the underlying reader. Read more

Reads a signed 24 bit integer from the underlying reader. Read more

Reads an unsigned 32 bit integer from the underlying reader. Read more

Reads a signed 32 bit integer from the underlying reader. Read more

Reads an unsigned 48 bit integer from the underlying reader. Read more

Reads a signed 48 bit integer from the underlying reader. Read more

Reads an unsigned 64 bit integer from the underlying reader. Read more

Reads a signed 64 bit integer from the underlying reader. Read more

Reads an unsigned 128 bit integer from the underlying reader. Read more

Reads a signed 128 bit integer from the underlying reader. Read more

Reads an unsigned n-bytes integer from the underlying reader. Read more

Reads a signed n-bytes integer from the underlying reader. Read more

Reads an unsigned n-bytes integer from the underlying reader.

Reads a signed n-bytes integer from the underlying reader.

Reads a IEEE754 single-precision (4 bytes) floating point number from the underlying reader. Read more

Reads a IEEE754 double-precision (8 bytes) floating point number from the underlying reader. Read more

Reads a sequence of unsigned 16 bit integers from the underlying reader. Read more

Reads a sequence of unsigned 32 bit integers from the underlying reader. Read more

Reads a sequence of unsigned 64 bit integers from the underlying reader. Read more

Reads a sequence of unsigned 128 bit integers from the underlying reader. Read more

Reads a sequence of signed 8 bit integers from the underlying reader. Read more

Reads a sequence of signed 16 bit integers from the underlying reader. Read more

Reads a sequence of signed 32 bit integers from the underlying reader. Read more

Reads a sequence of signed 64 bit integers from the underlying reader. Read more

Reads a sequence of signed 128 bit integers from the underlying reader. Read more

Reads a sequence of IEEE754 single-precision (4 bytes) floating point numbers from the underlying reader. Read more

👎 Deprecated since 1.2.0:

please use read_f32_into instead

DEPRECATED. Read more

Reads a sequence of IEEE754 double-precision (8 bytes) floating point numbers from the underlying reader. Read more

👎 Deprecated since 1.2.0:

please use read_f64_into instead

DEPRECATED. Read more

The type returned in the event of a conversion error.

Performs the conversion.

The type returned in the event of a conversion error.

Performs the conversion.