Module bam::record[−][src]

Expand description

SAM/BAM record, sequence, qualities and operations on them.

Re-exports

pub use cigar::Cigar;

pub use sequence::Sequence;

pub use sequence::Qualities;

Cigar and operations on it.

A wrappers around raw sequence and raw qualities.

Contains single position in the alignment between the record and the reference.

A wrapper around BAM/SAM flag.

BAM Record.

An error that can arise from alignment_entries.

= 0x2. Record and its mate mapped properly.

= 0x40. Record is the first segment in a template.

= 0x80. Record is the last segment in a template.

= 0x20. Record mate is on the reverse strand.

= 0x8. Record mate is unmapped.

= 0x400. Record is PCR or optical duplicate.

= 0x200. Record fails platform/vendor quality checks.

= 0x1. Record has a mate.

= 0x10. Record is on the reverse strand.

= 0x4. Record is unmapped.

= 0x100. Alignment is secondary (not primary).

= 0x800. Alignment is supplementary (chimeric/split).