Struct bam::record::AlignmentEntry

pub struct AlignmentEntry { /* fields omitted */ }

Contains single position in the alignment between the record and the reference.

Implementations

impl AlignmentEntry

pub fn record_pos(&self) -> Option<u32>

Returns record position unless within a deletion.

pub fn record_nt(&self) -> Option<u8>

Returns record nucleotide unless within a deletion.

pub fn record_pos_nt(&self) -> Option<(u32, u8)>

Returns record position and nucleotide unless within a deletion.

pub fn ref_pos(&self) -> Option<u32>

Returns reference position unless within an insertion.

pub fn ref_nt(&self) -> Option<u8>

Returns reference nucleotide unless within an insertion.

pub fn ref_pos_nt(&self) -> Option<(u32, u8)>

Returns reference position and nucleotide unless within an insertion.

pub fn is_insertion(&self) -> bool

Returns true if the current position is an insertion.

pub fn is_deletion(&self) -> bool

Returns true if the current position is a deletion.

pub fn is_aln_match(&self) -> bool

Returns true if the current position is an alignment match: both nucleotides are present but not necessarily equal.

pub fn is_seq_match(&self) -> bool

Returns true if the current position is a sequence match: both nucleotides are present and equal.

Trait Implementations

impl Clone for AlignmentEntry

fn clone(&self) -> AlignmentEntry

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AlignmentEntry

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.