Lee Katz

I am the senior bioinformatician in the Enteric Diseases Laboratory Branch at CDC. In my free time, I try to be a good husband and parent, and in my imaginary free time, I podcast with my co-hosts on the Micro Binfie podcast.

less than 1 minute read

A few blog posts that I’ve really liked for my niche of public health and bioinformatics.  I think one purpose of this blog can be to start gathering these posts and publications.  Maybe I should also start gathering tweets?

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Hash MLST analysis

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With EToKi and perhaps future MLST callers, we are possibly looking at a new class of MLST databases.

Story about Ginger

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Ginger passed away early this morning. Samantha had a good obituary for her

List of bioinformatics conferences

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Every fiscal year, we have to predict where we are going to travel over the whole next year. However, conferences mainly post on their own website, making no...

Converting a set of VCFs to distances

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I think that converting a bunch of VCF files to an alignment is still an artisinal thing. I made this sort of task in the Lyve-SET pipeline back in 2013 and ...