Pixi basics Permalink
I wrote a post on the microbifie blog on how to get started with Pixi.
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Call for action: bioinformatics conferences
Every fiscal year, we have to predict where we are going to travel over the whole next year. However, conferences mainly post on their own website, making no...
Hash collision experiment
I have talked a bit about hashes with MLST but one crucial issue with hashes is whether they have collisions. In other words, if we have two sequences, there...
What does it take to switch over to BAM from FASTQ? Permalink
I wrote a post on the microbifie blog.
Hash MLST analysis
With EToKi and perhaps future MLST callers, we are possibly looking at a new class of MLST databases 1. I’m not sure which caller was actuall...