Adapter trimming
After sequencing, one of the first steps is to remove adapter sequences. These are most commonly the sequences that are either used to initiate sequencing li...
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Pixi basics Permalink
I wrote a post on the microbifie blog on how to get started with Pixi.
Call for action: bioinformatics conferences
Every fiscal year, we have to predict where we are going to travel over the whole next year. However, conferences mainly post on their own website, making no...
Hash collision experiment
I have talked a bit about hashes with MLST but one crucial issue with hashes is whether they have collisions. In other words, if we have two sequences, there...
What does it take to switch over to BAM from FASTQ? Permalink
I wrote a post on the microbifie blog.