Lee Katz

I am the senior bioinformatician in the Enteric Diseases Laboratory Branch at CDC. In my free time, I try to be a good husband and parent, and in my imaginary free time, I podcast with my co-hosts on the Micro Binfie podcast.

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Pixi basics Permalink

less than 1 minute read

I wrote a post on the microbifie blog on how to get started with Pixi.

Call for action: bioinformatics conferences

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Every fiscal year, we have to predict where we are going to travel over the whole next year. However, conferences mainly post on their own website, making no...

Hash collision experiment

10 minute read

I have talked a bit about hashes with MLST but one crucial issue with hashes is whether they have collisions. In other words, if we have two sequences, there...

Hash MLST analysis

3 minute read

With EToKi and perhaps future MLST callers, we are possibly looking at a new class of MLST databases 1. I’m not sure which caller was actuall...