Crate fasten_sample
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downsample your reads
Examples
Get 10% of the reads
cat file.fastq | fasten_sample --frequency 0.1 > out.fastq
Usage
Usage: fasten_sample [-h] [-n INT] [-p] [-v] [-f FLOAT]
Options:
-h, --help Print this help menu.
-n, --numcpus INT Number of CPUs (default: 1)
-p, --paired-end The input reads are interleaved paired-end
-v, --verbose Print more status messages
-f, --frequency FLOAT
Frequency of sequences to print, 0 to 1. Default: 1