List of all items[−]
Structs
- bam_reader::BamReader
- bam_reader::IndexedReader
- bam_reader::IndexedReaderBuilder
- bam_reader::Region
- bam_reader::RegionViewer
- bam_writer::BamWriter
- bam_writer::BamWriterBuilder
- bgzip::Block
- bgzip::read::ConsecutiveReader
- bgzip::read::SeekReader
- bgzip::write::Writer
- bgzip::write::WriterBuilder
- header::Header
- header::HeaderEntry
- header::Tag
- index::Bin
- index::BinsIter
- index::Chunk
- index::Index
- index::LinearIndex
- index::Reference
- index::VirtualOffset
- pileup::Pileup
- pileup::PileupColumn
- pileup::PileupEntry
- record::AlignmentEntry
- record::EntriesIter
- record::Flag
- record::Record
- record::cigar::AlignedPairs
- record::cigar::Cigar
- record::cigar::CigarIter
- record::cigar::MatchingPairs
- record::sequence::Qualities
- record::sequence::RevComplIter
- record::sequence::RevComplIterAcgtn
- record::sequence::Sequence
- record::sequence::SubseqIter
- record::sequence::SubseqIterAcgtn
- record::tags::FloatArrayView
- record::tags::FloatArrayViewIter
- record::tags::IntArrayView
- record::tags::IntArrayViewIter
- record::tags::TagIter
- record::tags::TagViewer
- sam::SamReader
- sam::SamWriter
- sam::SamWriterBuilder
Enums
- bam_reader::ModificationTime
- bgzip::BlockError
- bgzip::BlockState
- header::EntryType
- header::HeaderLine
- pileup::AlnType
- record::EntriesError
- record::cigar::Class
- record::cigar::Operation
- record::tags::IntegerType
- record::tags::StringType
- record::tags::TagValue
Traits
Functions
Typedefs
Constants
- bgzip::MAX_BLOCK_SIZE
- bgzip::MAX_COMPRESSED_SIZE
- index::MAX_BIN
- record::ALL_SEGMENTS_ALIGNED
- record::FIRST_IN_PAIR
- record::LAST_IN_PAIR
- record::MATE_REVERSE_STRAND
- record::MATE_UNMAPPED
- record::PCR_OR_OPTICAL_DUPLICATE
- record::RECORD_FAILS_QC
- record::RECORD_PAIRED
- record::RECORD_REVERSE_STRAND
- record::RECORD_UNMAPPED
- record::SECONDARY
- record::SUPPLEMENTARY